PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01917g11015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 232aa    MW: 24515.4 Da    PI: 8.1133
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01917g11015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1202.9e-3731124389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++as++    s s  +s++s
  Niben101Scf01917g11015.1  31 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIVAATGTGTIPASFStL--SVSLRNSSPS 113
                               79******************************************************************88743..4444444445 PP

                       TCP  87 sg........k 89 
                               ++        +
  Niben101Scf01917g11015.1 114 ISpapfllgkR 124
                               54445555541 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.3033690IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-3436134IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSTSVEANGA TLCSHPQQHS SDACNNGALV VKKPPAKDRH SKVDGRGRRI RMPIVCAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIVAA TGTGTIPASF STLSVSLRNS SPSISPAPFL  120
LGKRLRPEDD DGSGEKDDAS NGATVVGPTP GFWAVPARPD FGQVWSFTPP PPPDMVAPTH  180
SSAARFLQQQ MGEESAARLG NYFPIAQGHL NLLASLSGSA PPSSGRRDDD GN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760508.11e-135PREDICTED: transcription factor TCP7-like
RefseqXP_016500863.11e-135PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-80TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV41e-109G3BGV4_SOLLC; TCP transcription factor 14
TrEMBLK4BP741e-109K4BP74_SOLLC; Uncharacterized protein
STRINGSolyc04g009180.1.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-74TCP family protein